Current Pharmaceutical Design

ISSN: 1381-6128

Current Pharmaceutical Design
Volume 15, Number 28, 2009

Contents


MHC and MHC-Like Molecules in the Design of Vaccines
Executive Editor: Vasso Apostolopoulos


Editorial: Pp. 3207-3208 [PMID: 19860670 PubMed - indexed for MEDLINE]


Prediction of MHC-Peptide Binding: A Systematic and Comprehensive Overview
Pp. 3209-3220
Esther M. Lafuente and Pedro A. Reche
[Abstract] [Full Text Article] [PMID: 19860671 PubMed - indexed for MEDLINE]


Characterization of MHC Ligands for Peptide Based Tumor Vaccination Pp. 3221-3236
Felix Klug, Matthias Miller, Hans-Henning Schmidt and Stefan Stevanovic
[Abstract] [Purchase Article] [PMID: 19860672 PubMed - indexed for MEDLINE]


Models of Antigen Receptor Activation in the Design of Vaccines Pp. 3237-3248
Eszter Molnár, Elaine-Pashupati Dopfer, Sumit Deswal and Wolfgang W.A. Schamel
[Abstract] [Purchase Article] [PMID: 19860673 PubMed - indexed for MEDLINE]


HLA-DR: Molecular Insights and Vaccine Design Pp. 3249-3261
Lawrence J. Stern and J. Mauricio Calvo-Calle
[Abstract] [Purchase Article] [PMID: 19860674 PubMed - indexed for MEDLINE]


Use of MHC II Structural Features in the Design of Vaccines for Organ-Specific Autoimmune Diseases Pp. 3262-3273
Antonis K. Moustakas and George K. Papadopoulos
[Abstract] [Purchase Article] [PMID: 19860675 PubMed - indexed for MEDLINE]


Non-Canonical Peptides Bound to MHC Pp. 3274-3282
Stephanie L. Day, Paul A. Ramsland and Vasso Apostolopoulos
[Abstract] [Purchase Article] [PMID: 19860676 PubMed - indexed for MEDLINE]


''Self-Nonself Peptides in the Design of Vaccines Pp. 3283-3289
Darja Kanduc
[Abstract] [Purchase Article] [PMID: 19860677 PubMed - indexed for MEDLINE]


The TCR/CD3 Complex: Opening the Gate to Successful Vaccination Pp. 3290-3300
Pilar Portolés and Jose M. Rojo
[Abstract] [Purchase Article] [PMID: 19860678 PubMed - indexed for MEDLINE]


NK Cell Receptors and Their Interactions with MHC Pp. 3301-3310
Roberto Biassoni, Elisabetta Ugolotti and Andrea De Maria
[Abstract] [Purchase Article] [PMID: 19860679 PubMed - indexed for MEDLINE]


Presentation of Lipid Antigens by CD1 Glycoproteins Pp. 3311-3317
André Schiefner and Ian A. Wilson
[Abstract] [Purchase Article] [PMID: 19860680 PubMed - indexed for MEDLINE]


HLA-G Molecule Pp. 3318-3324
Jun Kamishikiryo and Katsumi Maenaka
[Abstract] [Purchase Article] [PMID: 19860681 PubMed - indexed for MEDLINE]


HPLC and MS Analysis for the Identification and Characterisation of Peptides Presented in the Context of the Non-Classical Human Leukocytes Antigen (HLA) Class I Molecule HLA-E Pp. 3325-3335
Enrico Millo and Gianluca Damonte
[Abstract] [Purchase Article] [PMID: 19860682 PubMed - indexed for MEDLINE]


HLA-E and HLA-E-Bound Peptides: Recognition by Subsets of NK and T Cells Pp. 3336-3344
Gabriella Pietra, Chiara Romagnani, Lorenzo Moretta and Maria Cristina Mingari
[Abstract] [Purchase Article] [PMID: 19860683 PubMed - indexed for MEDLINE]




Abstracts



[Back to top] [PMID: 19860670 PubMed - indexed for MEDLINE]
Editorial: MHC and MHC-Like Molecules in the Design of Vaccines

CLASSICAL MHC CLASS I, CLASS II AND CLASS III MOLECULES

The major histocompatibility complex (MHC) predominantly expressed on the surface of antigen presenting cells, present short peptide fragments from antigens to T cells. The MHC is divided into 3 subgroups, MHC class I, MHC class II and MHC class III.

MHC class I encodes heterodimeric peptide binding proteins, in addition to antigen processing molecules such as tapasin and TAP. MHC class I consists of 3 gene families, for murine MHC class I, H-2K, H-2D and H-2L and for human MHC class I, HLA-A, HLA-B, HLA-C. Short peptide fragments are presented by MHC class I to CD8+ T cells. The first crystal structure of an MHC class I molecule was the human HLA-A2. Twenty years later, more than 170 crystal structures of peptide-MHC class I structures have been determined, which include, human HLA-A1, HLA-A2, HLA-A3, HLA-A11, HLA-B27, HLA-A31 HLA-Aw68, HLA-B35, HLA-B53, HLA-B44, HLA-57, and murine H-2Kb, H-2Db, H-2Ld and H-2Kk. The H-2 and HLA genes consist of a heavy chain and a light chain (β2-microglobulin). The heavy chain anchors the MHC class I into the cell membrane and is divided into 3 domains (α1, α2, α3). Short peptide fragments bind into a peptide binding groove which is located between the α1 and α2 helices. The structural data has aided in the interpretation of immunological data and has been of benefit in the design of peptide based vaccines against many diseases.

MHC class II encodes heterodimeric peptide binding proteins and proteins that modulate peptide loading onto MHC class II proteins in the lysosomal compartment such as MHC class II DM, -DQ and -DP. MHC class II encodes the genes I-A and I-E for murine and HLA-DP, HLA-DQ and HLA-DR for human (HLA-DPA1, -DPB1, -DQA1, -DQB1, -DRA, -DRB1). Peptide fragments, usually longer than MHC class I, are presented by MHC class II to CD4+ T cells. The first crystal structure of MHC class II was the human HLA-DR1. Sixteen years later structures of HLA-DR3, HLA-DR4, I-Ek, I-Ad, I-Ak, I-Ag7 etc have been determined. MHC class II comprises an α-chain (α1 , α2) and β-chain (β1 , β2). Peptides bind into a peptide binding groove (cleft) which is located between the α1 and β1 helices. The peptide binding cleft is open, thus accommodating longer amino acids than MHC class I, usually, 13-18 residues.

MHC class III encodes for other immune components, such as, complement (C2, C4a, factor B, Bf), cytokines (TNF-α, TNF-β and lymphotoxin), HSP70, enzymes for steroid synthesis, and, numerous other unidentified protesin. MHC class III is important in immune regulation and inflammation. MHC class III molecules do not binding or present antigenic peptides.

NON-CLASSICAL MHC / MHC-LIKE MOLECULES

Studies in the last decade have shown that numerous different antigens can be recognized by the TCR, such as the non-classical MHC molecules. The MHC class I molecules are subdivided into 2 families, (i) the classical MHC class I (class Ia) and (ii) the non-classical MHC class 1 molecules (class 1b). Murine and human MHC class Ia is highly polymorphic, whereas, MHC class Ib molecules show slight allelic variation. The MHC class Ib family members include H-2M, H-2Q and H-2T in mouse and HLA-E, HLA-F, HLA-G and HFE (HLA-H) in humans. The non-classical MHC class Ib molecules play a major role in innate immunity and in adaptive immunity regulating immunity to viruses, bacteria, tumors and self antigens. The crystal structures for HLA-E, HLA-G, H-2Q9, H-2M3 and HFE have been determined. The overall basic framework closely resembles that of MHC class Ia molecules. MHC class Ib molecules consist of a heavy chain (α1, α2, α3 helices) which is associated with the light chain, β2 microglobulin. Peptides bind between the α1 and α2 helices. The ability of CD8 T cells to recognize both MHC class Ia and class Ib molecules, suggests a common ancestry between these two molecules. It is possible to develop vaccines based on MHC class Ib restricted responses, however, the advantage of such vaccines remain to be determined. The non-classical MHC class II molecules include, HLA-DM and HLA-DO (or H-2DM and H-2-O in the mouse). HLA-DM stabilizes empty MHC class II molecules in lysozomes / endosomes until peptides are available to bind by exchanging with CLIP (invariant chain derived peptides). HLA-DO associates with HLA-DM and aids in the down-regulation of HLA-DM and is an important modulator of MHC class II restricted antigen processing.

MHC class I-like molecules interact with CD8 T cells, NK cells or γδ T cells. Structural and immunological studies of the MHC class I-like molecules, T10, T22, FcRn, CD1 and the stress induced MICA, MICB, ULBP, Rae1, H60, have given insights of their role and importance in the immune response. The expression of CD1 molecules is independent of TAP, however, it localizes in MHC class II compartments (late endosomes/lysosomes) where they bind to exogenous antigens. The CD1 family is divided into two groups in humans, group I - CD1a, CD1b and CD1c isotypes and group II - CD1d; CD1e has an intermediate isotype. The CD1 in mice is less complex, with only 2 closely related genes, CD1d1 and CD1d2, and are members of group II subfamily. The CD1d isotype is completely preserved in human, mouse, rabbit and rat. CD1 molecules are involved in presenting lipid antigens to T / NK cells. Immunological data and crystal structures of some of the MHC like molecules have provided vital information of how the immune system presents antigens, and may assist in the design of vaccines using or targeting these molecules.

MHC AND MHC-LIKE MOLECULES IN THE DESIGN OF VACCINES

Increasing basic understanding of cellular immune responses and crystal structures of how the immune system presents peptides and how T cells recognize peptides are important in peptide-based vaccine design. Structural insights into classical and non-classical MHC class I and class II molecules, their interaction with the TCR, the induction of glycopeptide specific T cells and their structure, non-canonical modes of peptide binding to MHC class I molecules and the identification and crystal structures of MHC-like molecules, have helped interpret immunological data and has been of great benefit in drug design and development of novel ligand-based vaccines against many diseases.

In a timely manner, this hot topic issue on MHC molecules is up-to-date on the immunological and structural features of such molecules and gives insights of the development of peptide based vaccines. The article by Reche et al. [1] gives an overall review on predicting peptides which bind to MHC. Stevanovic and colleagues [2] give a nice overview of the characterization of peptides which bind to MHC based on tumor vaccines. Schamel et al. [3] presents models of antigen receptor activation in the design of vaccines. Stern et al. [4] introduces MHC class II and its role in vaccine design and Papadopoulos et al. [5] presents MHC class II structural features in the design of vaccines for autoimmune diseases. Apostolopoulos et al. [6] introduces peptides which bind to MHC class I or class II molecules in a non-canonical manner and Kanduc [7] describes the differences between self and non-self in the design of vaccines. Rojo et al. [8] opens the gate for vaccination using information from TCR/CD3 complexes. Biassoni and colleagues [9] introduces the interactions of NK cells with MHC molecules, Wilson et al. [10] presents nice data on lipid antigens by CD1 glycoproteins, Maenaka et al. [11] presents data on the HLA-G molecule and Millo et al. [12] and Moretta et al. [13] give insights of HLA-E and its role in presenting peptides and its use for the design of vaccines.

There is a plethora of information already available, and, in the next 5 years, more information will become available both immunologically and structurally on classical and non-classical MHC molecules and MHC-like molecules. All the information together, will aid in a better understanding of antigen presentation and will aid in the design of more effective peptide-based vaccines.

REFERENCES

[1] Lafuente EM, Reche PA. Prediction of MHC-peptide binding. Curr Pharm Des 2009; 28: 3209-3220.

[2] Klug F, Miller M, Schmidt HH, Stevanovic S. Characterization of MHC ligands for peptide based tumor vaccination. Curr Pharm Des 2009; 28: 3221-3236.

[3] Molnar E, Dopfer E-P, Deswal P, Schamel W. Models of antigen receptor activation in the design of vaccines. Curr Pharm Des 2009; 28: 3237-3248.

[4] Stern L, Calvo-Calle JM. HLA-DR: Molecular insights and vaccine design. Curr Pharm Des 2009; 28: 3249-3261.

[5] Moustakas AK, Papadopoulos G. Use of MHC II structural features in the design of vaccines for organ-specific autoimmune diseases. Curr Pharm Des 2009; 3262-3273.

[6] Day S, Apostolopoulos V. Non-canonical peptides bound to MHC. Curr Pharm Des 2009; 28: 3274-3282.

[7] Kanduc D. Self - Nonself peptides in the design of vaccines. Curr Pharm Des 2009; 28: 3283-3289.

[8] Rojo JM, Portoles P. The TCR/CD3 complex: Opening the gate to successful vaccination. Curr Pharm Des 2009; 28: 3290-3300.

[9] Biassoni R, Ugolotti E, De Maria A. NK cell receptors and their interactions with MHC. Curr Pharm Des 2009; 28: 3301-3310.

[10] Schiefner A, Wilson IA. Presentation of lipid antigens by CD1 glycoproteins. Curr Pharm Des 2009; 3311-3317.

[11] Kamishikiryo J, Maenaka K. HLA-G molecule. Curr Pharm Des 2009; 28: 3318-3324.

[12] Millo E, Damonte G. HPLC and MS analysis for the identification and characterisation of peptides presented in the context of the non-classical HLA class I molecule HLA-E. Curr Pharm Des 2009; 28: 3325-3335.

[13] Pietra G, Romagnani C, Moretta L, Mingari MC. HLA-E and HLA-E bound peptides: recognition by subsets of NK and T cells. Curr Pharm Des 2009; 28: 3336-3344.


Vasso Apostolopoulos
Professor Head Immunology and Vaccine Lab
Burnet Institute,
Centre for Immunology
85 Commercial Road,
Prahran, VIC 3004
Tel: +613 9282 2111
Fax: +613 9282 2100
E-mail: vasso@burnet.edu.au


[Back to top] [Full Text Article] [PMID: 19860671 PubMed - indexed for MEDLINE]
Prediction of MHC-Peptide Binding: A Systematic and Comprehensive Overview
Esther M. Lafuente and Pedro A. Reche

T cell immune responses are driven by the recognition of peptide antigens (T cell epitopes) that are bound to major histocompatibility complex (MHC) molecules. T cell epitope immunogenicity is thus contingent on several events, including appropriate and effective processing of the peptide from its protein source, stable peptide binding to the MHC molecule, and recognition of the MHC-bound peptide by the T cell receptor. Of these three hallmarks, MHC-peptide binding is the most selective event that determines T cell epitopes. Therefore, prediction of MHC-peptide binding constitutes the principal basis for anticipating potential T cell epitopes. The tremendous relevance of epitope identification in vaccine design and in the monitoring of T cell responses has spurred the development of many computational methods for predicting MHC-peptide binding that improve the efficiency and economics of T cell epitope identification. In this report, we will systematically examine the available methods for predicting MHC-peptide binding and discuss their most relevant advantages and drawbacks.


[Back to top] [Purchase Article] [PMID: 19860672 PubMed - indexed for MEDLINE]
Characterization of MHC Ligands for Peptide Based Tumor Vaccination
Felix Klug, Matthias Miller, Hans-Henning Schmidt and Stefan Stevanovic

Short peptides derived from cellular proteins may escape complete destruction during protein catabolism and finally serve as a showcase in the immune system. Exposed at the cell surface to scrutiny by T cells, MHC:peptide complexes mediate a highly specific and immediate information transfer from diseased cells to the cellular immune system. Numerous clinical vaccination trials have been carried out employing MHC-presented peptides for T-cell activation with encouraging results but so far without a final breakthrough. In this review, we briefly highlight the molecular basis of MHC-peptide interactions governed by specificity pockets and anchor residues, as summarized in allele-specific peptide motifs. State-of-the-art technology is comprehensively presented and gives an overview of modern mass spectrometric strategies used for qualitative and quantitative analysis of MHC ligands. We describe the details of the HLA-B*3801 peptide motif by comparing features of natural MHC ligands, resulting in a scoring matrix that enables epitope prediction from any viral or tumor antigen. The pronounced individuality in peptide presentation by MHC molecules, as reflected in the highly specific peptide motifs of different MHC allotypes or the tissue-specific MHC ligandomes, represents a current area of interest within this field. Finally, the identification of post-translational modifications - most important phosphorylations - and the promises this holds will be discussed in this chapter.


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Models of Antigen Receptor Activation in the Design of Vaccines
Eszter Molnár, Elaine-Pashupati Dopfer, Sumit Deswal and Wolfgang W.A. Schamel

Vaccination techniques have developed rapidly over the last several decades from the immunization with live attenuated pathogens to the use of peptide and DNA subunit vaccines, from the use of classical adjuvants to cell-directed delivery. Vaccination techiques are also under investigation for the treatment of tumors and autoimmune diseases. However, profound knowledge of activation mechanisms of the immune cells on a molecular level is prerequisite for a better understanding of the immune response, and for the development of effective immunomodulatory tools. In this review we discuss the models of BCR and TCR activation, and using the example of some vacciantion technologies, we show, how the understanding of these models could help in the design of a new generation of vaccines.


[Back to top] [Purchase Article] [PMID: 19860674 PubMed - indexed for MEDLINE]
HLA-DR: Molecular Insights and Vaccine Design
Lawrence J. Stern and J. Mauricio Calvo-Calle

Vaccines are one of the most cost effective methods to control infectious diseases and at the same time one of the most complex products of the pharmaceutical industry. In contrast to other drugs, vaccines are used mainly in healthy individuals, often in children. For this reason, very high standards are set for their production. Subunit vaccines, especially peptide vaccines, can provide a safe and cost-effective alternative to vaccines produced from attenuated or inactivated pathogen preparations. Biochemical and structural studies of class II MHC - peptide complexes are beginning to provide a conceptual foundation for the rational design of subunit and peptide vaccines. In this review, we show how analysis of peptide-class II MHC complexes together with developing understanding of antigen processing pathways has opened the door to understanding the major rules that govern selection of T cell epitopes. We review progress towards computational prediction of such epitopes, and efforts to evaluate algorithms that incorporate various structural and/or biochemical aspects of the MHC-peptide interaction. Finally, using malaria as a model, we describe the development of a minimal subunit vaccine for the human malaria parasite Plasmodium falciparum.


[Back to top] [Purchase Article] [PMID: 19860675 PubMed - indexed for MEDLINE]
Use of MHC II Structural Features in the Design of Vaccines for Organ-Specific Autoimmune Diseases
Antonis K. Moustakas and George K. Papadopoulos

The Major Histocompatibility Complex Class II locus is the primary genetic linkage to autoimmune diseases. Susceptibility to each such disease is linked to different alleles, with a few alleles showing also dominant protection. The design of vaccines for autoimmune diseases is a long sought-after goal. As knowledge about the pathogenesis of these diseases has increased, the tools for such an approach have of necessity been refined. We review below the structural essence of MHC II-linked autoimmune diseases which centers on the binding of antigenic peptides to the disease-linked MHC II proteins, and the consequent activation of cognate TCRs from pathogenic CD4+ T cells. The state of affairs in two organ-specific autoimmune diseases, type 1 diabetes, celiac disease are covered, including attempts to treat these via antigen-specific MHC II-guided measures. We offer a couple of testable suggestions as to how this approach could be improved.


[Back to top] [Purchase Article] [PMID: 19860676 PubMed - indexed for MEDLINE]
Non-Canonical Peptides Bound to MHC
Stephanie L. Day, Paul A. Ramsland and Vasso Apostolopoulos

Central to the initiation of a T cell dependent immune response is the recognition of major histocompatibility complex (MHC) class I or class II molecules (in humans termed HLA and in mice termed H-2) bound to antigenic peptide. T cell receptors (TCR) have programmed specificity for particular peptide/MHC complexes, which ensures focused immune responses are generated against the antigen source. To design effective peptide based vaccines a comprehensive understanding of the specific interactions between MHC molecules and peptide, and of TCR recognition of MHC/peptide is valuable. We place particular emphasis on non-canonical bound peptides and their use in immunotherapy studies.


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''Self-Nonself Peptides in the Design of Vaccines
Darja Kanduc

What makes a peptide an epitope? This is a central question in immunology. The clear identification of precise molecular characteristics of epitopes would help define the basic mechanisms of self/non-self distinction and lead to a greater understanding of phenomena such as tolerance, autoimmunity, allergy, and tumor escape of immune surveillance. Importantly, clarifying the properties an epitope is paramount to the development of diagnostic and therapeutic vaccines. This review analyzes recent reports on experimentally identified B cell epitopes associated with multiple infectious disease pathologies, cancer, autoimmunity, hypertension, obesity, and allergy. It illustrates data that further support the notion that only a low level of sequence similarity to the host proteome is needed to modulate the B cell epitope-specific peptidome. Amino acid sequences that are unique to the antigen and are not shared with the host proteome are specifically targeted by the humoral immune response. Therefore, low-similarity peptides may be significant to the rational development of peptide-based clinical treatments in cancer, autoimmunity, infection, and allergy. Biologically, the low-similarity hypothesis further supports sequence uniqueness as the molecular signature of nonselfness in the currently ongoing self/non-self debate.


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The TCR/CD3 Complex: Opening the Gate to Successful Vaccination
Pilar Portolés and Jose M. Rojo

The success of vaccination is directly or indirectly based on the specificity of antigen recognition by T lymphocytes, their efficient activation and expansion, and the generation of vaccine-specific effector and memory cells. These traits are largely dependent on the correct assembly and expression of sufficient number of functional TCR/CD3 complexes in the cell surface. In this review, some of the genetic and epigenetic factors that determine the correct assembly and structure of the TCR/CD3 complex are summarized. Those physiologic or pathologic factors leading to natural variations, or pathologic alterations of the standard that might lead to poor response to vaccination and that could give some possibilities to pharmacological intervention are emphasized.


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NK Cell Receptors and Their Interactions with MHC
Roberto Biassoni, Elisabetta Ugolotti and Andrea De Maria

MHC-specific Natural Killer inhibitory receptors display a conserved and fundamental function in the regulation of NK-mediated cytolysis. Their importance is substantiated by the fact that during speciation different molecular receptor structures have evolved to maintain inhibitory regulation of NK cells. The information gained during these last twenty years begins to be fruitfully used in the therapy of leukemias, but a lot has to be still done. In particular, we need to understand the role of activating KIR and their ligand(s), since their role in the course of different viral diseases is still intriguing.


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Presentation of Lipid Antigens by CD1 Glycoproteins
André Schiefner and Ian A. Wilson

CD1 molecules are a family of non-polymorphic, class I antigen-presenting glycoproteins, which bind and present amphiphilic lipid antigens for recognition to T cells. Two groups of CD1 molecules are involved in presentation of self and foreign lipid antigens: group 1 (CD1a, CD1b and CD1c) and group 2 (CD1d). Crystal structures of CD1a, CD1b and CD1d in complex with different ligands have revealed the key principles of lipid presentation and defined unique binding groove architectures for the individual CD1 isoforms, which enable binding and presentation of an enormous variety of lipids. Structural and biochemical insights into presentation of glycolipids by CD1d have led to the discovery of novel lipid antigens and to a broader understanding of the underlying structural and mechanistic principles of NKT cell stimulation. Some of these glycolipids show enhanced and more specific stimulatory properties and crystal structures have suggested further design strategies for elicitation of immuno-stimulatory compounds that may enable selective control of the secretion of regulatory T helper cytokines.


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HLA-G Molecule
Jun Kamishikiryo and Katsumi Maenaka

Human leukocyte antigen-G (HLA-G) is a non-classical HLA class I molecule, which was first discovered in 1987 by Geraghty and colleagues [1]. While classical HLA class I molecules are expressed on all nucleated cells, the expression of the HLA-G molecule is highly tissue-restricted, such as to placental trophoblast cells. HLA-G binds inhibitory receptors such as leukocyte immunoglobulin-like receptors B1 (LILRB1/ILT2/CD85j) and LILRB2 (ILT4/CD85d), which are widely expressed on immune cells, to suppress a broad range of immune responses [2-4]. Thus, the expression of HLA-G in placenta protects the fetus from the maternal immune system. On the other hand, emerging studies have shown the relevance of the HLA-G molecule in pathologic conditions, such as transplantation rejection, autoimmunity, and cancer.

HLA-G has other unique characteristics, in contrast with classical HLA molecules, including the existence of various forms of HLA-G: several splice variants, subunit-deficient conformations, homodimers, and their combinations have been found [5]. In this review, we highlight the molecular basis for the tolerogenic ability of the HLA-G molecule, especially by LILR recognition of various forms of HLA-G. We also discuss the potential clinical applications of HLA-G molecules.


[Back to top] [Purchase Article] [PMID: 19860682 PubMed - indexed for MEDLINE]
HPLC and MS Analysis for the Identification and Characterisation of Peptides Presented in the Context of the Non-Classical Human Leukocytes Antigen (HLA) Class I Molecule HLA-E
Enrico Millo and Gianluca Damonte

In addition to a variety of other techniques used in T-cell epitope identification, mass spectrometery coupled to liquid chromatography have now become an important and sensitive tool in separation, detection, and sequence analysis of highly complex natural major histocompatibility complex (MHC) ligand mixtures. In this article, we present current strategies for the identification of MHC eluted peptides using high-performance liquid chromatography coupled to tandem mass spectrometry (HPLC-MS/MS) with a particular recall to those presented in the context of the non classical human leukocytes antigen (HLA) class I molecule HLA-E.

In addition we also discuss the advantages and disadvantages of the methods available in the literature to concentrate and fractionate the peptides prior to analysis by mass spectrometry. An application of our method for isolation and characterization of peptides presented in the context of HLA-E is finally reported.


[Back to top] [Purchase Article] [PMID: 19860683 PubMed - indexed for MEDLINE]
HLA-E and HLA-E-Bound Peptides: Recognition by Subsets of NK and T Cells
Gabriella Pietra, Chiara Romagnani, Lorenzo Moretta and Maria Cristina Mingari

In humans, major histocompatibility complex (MHC) class I molecules comprise the classical (class Ia) human leukocyte antigens (HLA)-A, -B, and -C, and the non-classical (class Ib) HLA-E, -F, -G and H (HFE) molecules. The best-characterized MHC class Ib molecule is HLA-E. HLA-E was first described as a non-polymorphic ligand of the CD94/NKG2 receptors expressed mainly by natural killer (NK) cells and its role was thus confined to the regulation of NK cell function. Therefore, interaction of HLA-E with the CD94/NKG2 receptors can result in either inhibition or activation of NK cells, depending on the peptide presented and on the NKG2 receptor CD94 is associated with. Thus, CD94/NKG2A functions as an inhibitory receptor, whereas CD94/NKG2C functions as an activating receptor. However, recent evidences obtained by our group and others indicated that HLA-E represents a novel restriction element for ab T-cell receptor (TCR)-mediated recognition. Although HLA-E displays a selective preference for nonameric peptides derived from the leader sequences of various HLA class I alleles, several reports showed that it can also present non-canonical peptides derived from both stress-related and pathogen-associated proteins. Because HLA-E displays binding specificity for innate CD94/NKG2 receptors but also has the features of an antigen-presenting molecule including the ability to be recognized by ab T cells it does appear that this MHC class Ib molecule plays an important role in both natural and acquired immune responses.




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